J4_4V53_006

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V53|1|BB|U|653, 4V53|1|BB|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V53_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4941

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V53|1|BB|C|601
4V53|1|BB|A|602
4V53|1|BB|A|603
4V53|1|BB|G|604
*
4V53|1|BB|C|624
4V53|1|BB|G|625
4V53|1|BB|A|626
4V53|1|BB|A|627
4V53|1|BB|G|628
*
4V53|1|BB|C|635
4V53|1|BB|G|636
4V53|1|BB|A|637
4V53|1|BB|G|638
*
4V53|1|BB|C|650
4V53|1|BB|G|651
4V53|1|BB|U|652
4V53|1|BB|U|653
4V53|1|BB|A|654
4V53|1|BB|A|655
4V53|1|BB|G|656

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15