J4_4V53_008

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4V53|1|BB|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V53_008 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1424

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V53|1|BB|G|1310
4V53|1|BB|G|1311
4V53|1|BB|U|1312
4V53|1|BB|U|1313
4V53|1|BB|C|1314
*
4V53|1|BB|G|1338
4V53|1|BB|G|1339
4V53|1|BB|U|1340
4V53|1|BB|G|1341
4V53|1|BB|A|1342
4V53|1|BB|G|1343
*
4V53|1|BB|C|1404
4V53|1|BB|U|1405
*
4V53|1|BB|A|1597
4V53|1|BB|A|1598
4V53|1|BB|U|1599
4V53|1|BB|C|1600
4V53|1|BB|G|1601
4V53|1|BB|U|1602
4V53|1|BB|A|1603
4V53|1|BB|C|1604

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23