J4_4V53_019

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V53_019 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1114

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V53|1|DB|G|297
4V53|1|DB|G|298
4V53|1|DB|A|299
4V53|1|DB|A|300
4V53|1|DB|G|301
*
4V53|1|DB|C|316
4V53|1|DB|G|317
4V53|1|DB|C|318
4V53|1|DB|G|319
*
4V53|1|DB|C|323
4V53|1|DB|A|324
4V53|1|DB|G|325
*
4V53|1|DB|C|337
4V53|1|DB|G|338
4V53|1|DB|U|339
4V53|1|DB|A|340
4V53|1|DB|C|341

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DU

50S ribosomal protein L24