J4_4V53_026

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V53|1|DB|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V53_026 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1091

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V53|1|DB|C|1833
4V53|1|DB|U|1834
4V53|1|DB|G|1835
*
4V53|1|DB|C|1905
4V53|1|DB|G|1906
*
4V53|1|DB|C|1924
4V53|1|DB|C|1925
4V53|1|DB|U|1926
4V53|1|DB|A|1927
4V53|1|DB|A|1928
4V53|1|DB|G|1929
4V53|1|DB|G|1930
4V53|1|DB|U|1931
4V53|1|DB|A|1932
4V53|1|DB|G|1933
*
4V53|1|DB|C|1967
4V53|1|DB|G|1968
4V53|1|DB|A|1969
4V53|1|DB|A|1970
4V53|1|DB|U|1971
4V53|1|DB|G|1972

Current chains

Chain DB

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2