J4_4V54_006

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V54|1|BB|U|653, 4V54|1|BB|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V54_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.3306

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V54|1|BB|C|601
4V54|1|BB|A|602
4V54|1|BB|A|603
4V54|1|BB|G|604
*
4V54|1|BB|C|624
4V54|1|BB|G|625
4V54|1|BB|A|626
4V54|1|BB|A|627
4V54|1|BB|G|628
*
4V54|1|BB|C|635
4V54|1|BB|G|636
4V54|1|BB|A|637
4V54|1|BB|G|638
*
4V54|1|BB|C|650
4V54|1|BB|G|651
4V54|1|BB|U|652
4V54|1|BB|U|653
4V54|1|BB|A|654
4V54|1|BB|A|655
4V54|1|BB|G|656

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15