J4_4V56_006

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V56|1|BB|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V56_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1869

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V56|1|BB|C|601
4V56|1|BB|A|602
4V56|1|BB|A|603
4V56|1|BB|G|604
*
4V56|1|BB|C|624
4V56|1|BB|G|625
4V56|1|BB|A|626
4V56|1|BB|A|627
4V56|1|BB|G|628
*
4V56|1|BB|C|635
4V56|1|BB|G|636
4V56|1|BB|A|637
4V56|1|BB|G|638
*
4V56|1|BB|C|650
4V56|1|BB|G|651
4V56|1|BB|U|652
4V56|1|BB|U|653
4V56|1|BB|A|654
4V56|1|BB|A|655
4V56|1|BB|G|656

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15