J4_4V56_024

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V56|1|DB|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V56_024 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1308

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4V56|1|DB|C|1833
4V56|1|DB|U|1834
4V56|1|DB|G|1835
*
4V56|1|DB|C|1905
4V56|1|DB|G|1906
*
4V56|1|DB|C|1924
4V56|1|DB|C|1925
4V56|1|DB|U|1926
4V56|1|DB|A|1927
4V56|1|DB|A|1928
4V56|1|DB|G|1929
4V56|1|DB|G|1930
4V56|1|DB|U|1931
4V56|1|DB|A|1932
4V56|1|DB|G|1933
*
4V56|1|DB|C|1967
4V56|1|DB|G|1968
4V56|1|DB|A|1969
4V56|1|DB|A|1970
4V56|1|DB|U|1971
4V56|1|DB|G|1972

Current chains

Chain DB

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2