J4_4V57_005

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V57|1|BB|G|297
4V57|1|BB|G|298
4V57|1|BB|A|299
4V57|1|BB|A|300
4V57|1|BB|G|301
*
4V57|1|BB|C|316
4V57|1|BB|G|317
4V57|1|BB|C|318
4V57|1|BB|G|319
*
4V57|1|BB|C|323
4V57|1|BB|A|324
4V57|1|BB|G|325
*
4V57|1|BB|C|337
4V57|1|BB|G|338
4V57|1|BB|U|339
4V57|1|BB|A|340
4V57|1|BB|C|341

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24