J4_4V5C_013

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5C_013 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.057

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V5C|1|BA|G|1772
4V5C|1|BA|A|1773
4V5C|1|BA|C|1774
4V5C|1|BA|U|1775
4V5C|1|BA|G|1776
*
4V5C|1|BA|C|1788
4V5C|1|BA|A|1789
4V5C|1|BA|C|1790
4V5C|1|BA|A|1791
4V5C|1|BA|G|1792
*
4V5C|1|BA|C|1827
4V5C|1|BA|G|1828
4V5C|1|BA|A|1829
4V5C|1|BA|C|1830
*
4V5C|1|BA|G|1975
4V5C|1|BA|U|1976
4V5C|1|BA|A|1977
4V5C|1|BA|A|1978
4V5C|1|BA|C|1979

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S RIBOSOMAL PROTEIN L2