J4_4V5C_020
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 4V5C|1|CV|U|8, 4V5C|1|CV|U|47, 4V5C|1|CV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5C_020 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.327
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V5C|1|CV|G|7
4V5C|1|CV|U|8
4V5C|1|CV|G|9
4V5C|1|CV|G|10
*
4V5C|1|CV|C|25
4V5C|1|CV|G|26
4V5C|1|CV|U|27
4V5C|1|CV|C|28
*
4V5C|1|CV|G|42
4V5C|1|CV|A|43
4V5C|1|CV|A|44
4V5C|1|CV|G|45
4V5C|1|CV|G|46
4V5C|1|CV|U|47
4V5C|1|CV|C|48
4V5C|1|CV|G|49
*
4V5C|1|CV|C|65
4V5C|1|CV|C|66
Current chains
- Chain CV
- P-SITE TRNA FMET
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CY
- Transfer RNA; tRNA
- Chain D0
- 50S RIBOSOMAL PROTEIN L27
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DQ
- 50S RIBOSOMAL PROTEIN L16
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