3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
4V5C|1|DA|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V5C_030 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0679
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4V5C|1|DA|U|1833
4V5C|1|DA|U|1834
4V5C|1|DA|G|1835
*
4V5C|1|DA|C|1905
4V5C|1|DA|G|1906
*
4V5C|1|DA|C|1924
4V5C|1|DA|C|1925
4V5C|1|DA|U|1926
4V5C|1|DA|A|1927
4V5C|1|DA|A|1928
4V5C|1|DA|G|1929
4V5C|1|DA|G|1930
4V5C|1|DA|U|1931
4V5C|1|DA|A|1932
4V5C|1|DA|G|1933
*
4V5C|1|DA|C|1967
4V5C|1|DA|G|1968
4V5C|1|DA|A|1969
4V5C|1|DA|A|1970
4V5C|1|DA|A|1971
4V5C|1|DA|A|1972

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain CV
Transfer RNA; tRNA
Chain DD
50S RIBOSOMAL PROTEIN L2

Coloring options:


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