J4_4V5D_010

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

4V5D|1|BA|G|1271, 4V5D|1|BA|A|1272, 4V5D|1|BA|U|1273, 4V5D|1|BA|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5D_010 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0726

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4V5D|1|BA|C|1270
4V5D|1|BA|G|1271
4V5D|1|BA|A|1272
4V5D|1|BA|U|1273
4V5D|1|BA|A|1274
4V5D|1|BA|A|1275
4V5D|1|BA|A|1276
*
4V5D|1|BA|U|1294
4V5D|1|BA|C|1295
*
4V5D|1|BA|G|1645
4V5D|1|BA|C|1646
4V5D|1|BA|G|1647
4V5D|1|BA|C|1648
*
4V5D|1|BA|G|2009
4V5D|1|BA|G|2010

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S RIBOSOMAL PROTEIN L32

Chain BR

50S RIBOSOMAL PROTEIN L17

Chain BW

50S RIBOSOMAL PROTEIN L22