J4_4V5D_021
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4V5D|1|CV|U|8, 4V5D|1|CV|U|47, 4V5D|1|CV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5D_021 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.2378
- The information below is about J4_7EQJ_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4V5D|1|CV|A|7
4V5D|1|CV|U|8
4V5D|1|CV|A|9
4V5D|1|CV|G|10
*
4V5D|1|CV|C|25
4V5D|1|CV|A|26
4V5D|1|CV|G|27
*
4V5D|1|CV|C|43
4V5D|1|CV|G|44
4V5D|1|CV|U|45
4V5D|1|CV|G|46
4V5D|1|CV|U|47
4V5D|1|CV|C|48
4V5D|1|CV|C|49
*
4V5D|1|CV|G|65
4V5D|1|CV|U|66
Current chains
- Chain CV
- P AND A-SITE PHE-TRNA PHE
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CY
- Transfer RNA; tRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DQ
- 50S RIBOSOMAL PROTEIN L16
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