J4_4V5D_025

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCG

Length

17 nucleotides

Bulged bases

4V5D|1|DA|A|603, 4V5D|1|DA|C|652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|DA|C|601
4V5D|1|DA|G|602
4V5D|1|DA|A|603
4V5D|1|DA|G|604
*
4V5D|1|DA|C|624
4V5D|1|DA|G|625
4V5D|1|DA|U|626
4V5D|1|DA|A|627
4V5D|1|DA|G|628
*
4V5D|1|DA|C|635
4V5D|1|DA|G|636
4V5D|1|DA|A|637
4V5D|1|DA|G|638
*
4V5D|1|DA|C|650
4V5D|1|DA|G|651
4V5D|1|DA|C|652
4V5D|1|DA|G|656

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D8

50S RIBOSOMAL PROTEIN L35

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DP

50S RIBOSOMAL PROTEIN L15