J4_4V5D_030

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5D_030 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0566

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V5D|1|DA|G|1772
4V5D|1|DA|A|1773
4V5D|1|DA|C|1774
4V5D|1|DA|U|1775
4V5D|1|DA|G|1776
*
4V5D|1|DA|C|1788
4V5D|1|DA|A|1789
4V5D|1|DA|C|1790
4V5D|1|DA|A|1791
4V5D|1|DA|G|1792
*
4V5D|1|DA|C|1827
4V5D|1|DA|G|1828
4V5D|1|DA|A|1829
4V5D|1|DA|C|1830
*
4V5D|1|DA|G|1975
4V5D|1|DA|U|1976
4V5D|1|DA|A|1977
4V5D|1|DA|A|1978
4V5D|1|DA|C|1979

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S RIBOSOMAL PROTEIN L2