J4_4V5D_031

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V5D|1|DA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5D_031 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0713

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V5D|1|DA|U|1833
4V5D|1|DA|U|1834
4V5D|1|DA|G|1835
*
4V5D|1|DA|C|1905
4V5D|1|DA|G|1906
*
4V5D|1|DA|C|1924
4V5D|1|DA|C|1925
4V5D|1|DA|U|1926
4V5D|1|DA|A|1927
4V5D|1|DA|A|1928
4V5D|1|DA|G|1929
4V5D|1|DA|G|1930
4V5D|1|DA|U|1931
4V5D|1|DA|A|1932
4V5D|1|DA|G|1933
*
4V5D|1|DA|C|1967
4V5D|1|DA|G|1968
4V5D|1|DA|A|1969
4V5D|1|DA|A|1970
4V5D|1|DA|A|1971
4V5D|1|DA|A|1972

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CV

Transfer RNA; tRNA

Chain DD

50S RIBOSOMAL PROTEIN L2