J4_4V5E_013

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V5E|1|BA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5E_013 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0644

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V5E|1|BA|U|1833
4V5E|1|BA|U|1834
4V5E|1|BA|G|1835
*
4V5E|1|BA|C|1905
4V5E|1|BA|G|1906
*
4V5E|1|BA|C|1924
4V5E|1|BA|C|1925
4V5E|1|BA|U|1926
4V5E|1|BA|A|1927
4V5E|1|BA|A|1928
4V5E|1|BA|G|1929
4V5E|1|BA|G|1930
4V5E|1|BA|U|1931
4V5E|1|BA|A|1932
4V5E|1|BA|G|1933
*
4V5E|1|BA|C|1967
4V5E|1|BA|G|1968
4V5E|1|BA|A|1969
4V5E|1|BA|A|1970
4V5E|1|BA|A|1971
4V5E|1|BA|A|1972

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain BD

50S RIBOSOMAL PROTEIN L2