J4_4V5E_032
3D structure
- PDB id
- 4V5E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Insights into translational termination from the structure of RF2 bound to the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CCCGGAUAG*CAGG*CGUGUCCUUG*CGAGUCCGGG
- Length
- 33 nucleotides
- Bulged bases
- 4V5E|1|AW|U|8, 4V5E|1|AW|U|47, 4V5E|1|AW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5E|1|AW|C|2
4V5E|1|AW|C|3
4V5E|1|AW|C|4
4V5E|1|AW|G|5
4V5E|1|AW|G|6
4V5E|1|AW|A|7
4V5E|1|AW|U|8
4V5E|1|AW|A|9
4V5E|1|AW|G|10
*
4V5E|1|AW|C|25
4V5E|1|AW|A|26
4V5E|1|AW|G|27
4V5E|1|AW|G|28
*
4V5E|1|AW|C|43
4V5E|1|AW|G|44
4V5E|1|AW|U|45
4V5E|1|AW|G|46
4V5E|1|AW|U|47
4V5E|1|AW|C|48
4V5E|1|AW|C|49
4V5E|1|AW|U|50
4V5E|1|AW|U|51
4V5E|1|AW|G|52
*
4V5E|1|AW|C|62
4V5E|1|AW|G|63
4V5E|1|AW|A|64
4V5E|1|AW|G|65
4V5E|1|AW|U|66
4V5E|1|AW|C|67
4V5E|1|AW|C|68
4V5E|1|AW|G|69
4V5E|1|AW|G|70
4V5E|1|AW|G|71
Current chains
- Chain AW
- E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)
Nearby chains
- Chain AG
- 30S RIBOSOMAL PROTEIN S7
- Chain AK
- 30S RIBOSOMAL PROTEIN S11
- Chain B1
- 50S RIBOSOMAL PROTEIN L28
- Chain B6
- 50S RIBOSOMAL PROTEIN L33
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 50S RIBOSOMAL PROTEIN L1
Coloring options: