J4_4V5F_031

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5F_031 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.1251

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V5F|1|BA|C|297
4V5F|1|BA|G|298
4V5F|1|BA|A|299
4V5F|1|BA|A|300
4V5F|1|BA|G|301
*
4V5F|1|BA|C|316
4V5F|1|BA|G|317
4V5F|1|BA|C|318
4V5F|1|BA|C|319
*
4V5F|1|BA|G|323
4V5F|1|BA|A|324
4V5F|1|BA|G|325
*
4V5F|1|BA|C|337
4V5F|1|BA|G|338
4V5F|1|BA|U|339
4V5F|1|BA|A|340
4V5F|1|BA|G|341

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BY

50S RIBOSOMAL PROTEIN L24