J4_4V5G_003

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG

Length

30 nucleotides

Bulged bases

4V5G|1|AA|A|572, 4V5G|1|AA|G|576, 4V5G|1|AA|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5G|1|AA|C|569
4V5G|1|AA|G|570
4V5G|1|AA|U|571
4V5G|1|AA|A|572
4V5G|1|AA|A|573
4V5G|1|AA|A|574
4V5G|1|AA|G|575
4V5G|1|AA|G|576
4V5G|1|AA|G|577
*
4V5G|1|AA|C|764
4V5G|1|AA|G|765
4V5G|1|AA|A|766
4V5G|1|AA|A|767
4V5G|1|AA|A|768
4V5G|1|AA|G|769
*
4V5G|1|AA|C|810
4V5G|1|AA|C|811
4V5G|1|AA|C|812
4V5G|1|AA|U|813
4V5G|1|AA|A|814
4V5G|1|AA|A|815
4V5G|1|AA|A|816
4V5G|1|AA|C|817
4V5G|1|AA|G|818
4V5G|1|AA|A|819
4V5G|1|AA|U|820
4V5G|1|AA|G|821
*
4V5G|1|AA|C|879
4V5G|1|AA|C|880
4V5G|1|AA|G|881

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AH

30S RIBOSOMAL PROTEIN S8

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AO

30S RIBOSOMAL PROTEIN S15

Chain AQ

30S RIBOSOMAL PROTEIN S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA