J4_4V5G_006
3D structure
- PDB id
- 4V5G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- AUAG*CGCA*UGAG(7MG)UCG*CU
- Length
- 18 nucleotides
- Bulged bases
- 4V5G|1|AY|U|8, 4V5G|1|AY|U|47, 4V5G|1|AY|C|48
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5G_006 not in the Motif Atlas
- Homologous match to J4_4RDX_001
- Geometric discrepancy: 0.4673
- The information below is about J4_4RDX_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5G|1|AY|A|7
4V5G|1|AY|U|8
4V5G|1|AY|A|9
4V5G|1|AY|G|10
*
4V5G|1|AY|C|25
4V5G|1|AY|G|26
4V5G|1|AY|C|27
4V5G|1|AY|A|28
*
4V5G|1|AY|U|42
4V5G|1|AY|G|43
4V5G|1|AY|A|44
4V5G|1|AY|G|45
4V5G|1|AY|7MG|46
4V5G|1|AY|U|47
4V5G|1|AY|C|48
4V5G|1|AY|G|49
*
4V5G|1|AY|C|65
4V5G|1|AY|U|66
Current chains
- Chain AY
- A-SITE TRNA THR
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL
- 30S RIBOSOMAL PROTEIN S12
- Chain AZ
- ELONGATION FACTOR TU-A
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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