3D structure

PDB id
4V5G (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GAUAG*CAG*CGUGUCC*GUC
Length
18 nucleotides
Bulged bases
4V5G|1|CV|U|8, 4V5G|1|CV|U|47, 4V5G|1|CV|C|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5G|1|CV|G|6
4V5G|1|CV|A|7
4V5G|1|CV|U|8
4V5G|1|CV|A|9
4V5G|1|CV|G|10
*
4V5G|1|CV|C|25
4V5G|1|CV|A|26
4V5G|1|CV|G|27
*
4V5G|1|CV|C|43
4V5G|1|CV|G|44
4V5G|1|CV|U|45
4V5G|1|CV|G|46
4V5G|1|CV|U|47
4V5G|1|CV|C|48
4V5G|1|CV|C|49
*
4V5G|1|CV|G|65
4V5G|1|CV|U|66
4V5G|1|CV|C|67

Current chains

Chain CV
E-SITE TRNA PHE OR P-SITE TRNA PHE

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain CM
30S RIBOSOMAL PROTEIN S13
Chain DA
Large subunit ribosomal RNA; LSU rRNA
Chain DQ
50S RIBOSOMAL PROTEIN L16

Coloring options:

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