J4_4V5G_042

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAGCUUAAG*CGGAGGCGUAG*CGAG*CGCAAGCGGGCCGCACGCGGCCCGCAAAG

Length

54 nucleotides

Bulged bases

4V5G|1|DA|A|653, 4V5G|1|DA|A|654, 4V5G|1|DA|C|654|||I, 4V5G|1|DA|A|654|||J, 4V5G|1|DA|C|654|||K

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5G|1|DA|C|601
4V5G|1|DA|G|602
4V5G|1|DA|A|603
4V5G|1|DA|G|604
4V5G|1|DA|C|605
4V5G|1|DA|U|606
4V5G|1|DA|U|607
4V5G|1|DA|A|608
4V5G|1|DA|A|609
4V5G|1|DA|G|610
*
4V5G|1|DA|C|618
4V5G|1|DA|G|619
4V5G|1|DA|G|620
4V5G|1|DA|A|621
4V5G|1|DA|G|622
4V5G|1|DA|G|623
4V5G|1|DA|C|624
4V5G|1|DA|G|625
4V5G|1|DA|U|626
4V5G|1|DA|A|627
4V5G|1|DA|G|628
*
4V5G|1|DA|C|635
4V5G|1|DA|G|636
4V5G|1|DA|A|637
4V5G|1|DA|G|638
*
4V5G|1|DA|C|650
4V5G|1|DA|G|651
4V5G|1|DA|C|652
4V5G|1|DA|A|653
4V5G|1|DA|A|654
4V5G|1|DA|G|654|||A
4V5G|1|DA|C|654|||B
4V5G|1|DA|G|654|||C
4V5G|1|DA|G|654|||D
4V5G|1|DA|G|654|||E
4V5G|1|DA|C|654|||F
4V5G|1|DA|C|654|||G
4V5G|1|DA|G|654|||H
4V5G|1|DA|C|654|||I
4V5G|1|DA|A|654|||J
4V5G|1|DA|C|654|||K
4V5G|1|DA|G|654|||L
4V5G|1|DA|C|654|||M
4V5G|1|DA|G|654|||N
4V5G|1|DA|G|654|||O
4V5G|1|DA|C|654|||P
4V5G|1|DA|C|654|||Q
4V5G|1|DA|C|654|||R
4V5G|1|DA|G|654|||S
4V5G|1|DA|C|654|||T
4V5G|1|DA|A|654|||U
4V5G|1|DA|A|654|||V
4V5G|1|DA|A|655
4V5G|1|DA|G|656

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D8

50S RIBOSOMAL PROTEIN L35

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DP

50S RIBOSOMAL PROTEIN L15