J4_4V5K_005
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 4V5K|1|AV|U|8, 4V5K|1|AV|U|47, 4V5K|1|AV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5K_005 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.2773
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V5K|1|AV|G|7
4V5K|1|AV|U|8
4V5K|1|AV|G|9
4V5K|1|AV|G|10
*
4V5K|1|AV|C|25
4V5K|1|AV|G|26
4V5K|1|AV|U|27
4V5K|1|AV|C|28
*
4V5K|1|AV|G|42
4V5K|1|AV|A|43
4V5K|1|AV|A|44
4V5K|1|AV|G|45
4V5K|1|AV|G|46
4V5K|1|AV|U|47
4V5K|1|AV|C|48
4V5K|1|AV|G|49
*
4V5K|1|AV|C|65
4V5K|1|AV|C|66
Current chains
- Chain AV
- E-SITE TRNA PHE OR P-SITE TRNA PHE
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AS
- 30S RIBOSOMAL PROTEIN S19
- Chain AY
- COLICIN-E3
- Chain B0
- 50S RIBOSOMAL PROTEIN L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
Coloring options: