3D structure

PDB id
4V5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAAG*CGCC*GAG*CGUAG
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V5K_007 not in the Motif Atlas
Homologous match to J4_9DFE_002
Geometric discrepancy: 0.0659
The information below is about J4_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

4V5K|1|BA|C|297
4V5K|1|BA|G|298
4V5K|1|BA|A|299
4V5K|1|BA|A|300
4V5K|1|BA|G|301
*
4V5K|1|BA|C|316
4V5K|1|BA|G|317
4V5K|1|BA|C|318
4V5K|1|BA|C|319
*
4V5K|1|BA|G|323
4V5K|1|BA|A|324
4V5K|1|BA|G|325
*
4V5K|1|BA|C|337
4V5K|1|BA|G|338
4V5K|1|BA|U|339
4V5K|1|BA|A|340
4V5K|1|BA|G|341

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BF
50S RIBOSOMAL PROTEIN L4
Chain BY
50S RIBOSOMAL PROTEIN L24

Coloring options:


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