J4_4V5K_011

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

4V5K|1|BA|A|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5K_011 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.1531

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V5K|1|BA|G|1444
4V5K|1|BA|A|1445
4V5K|1|BA|C|1445|||A
*
4V5K|1|BA|G|1466
4V5K|1|BA|C|1467
*
4V5K|1|BA|G|1525
4V5K|1|BA|G|1526
*
4V5K|1|BA|C|1546
4V5K|1|BA|C|1547

Current chains

Chain BA

23S ribosomal RNA

Nearby chains