J4_4V5K_013

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V5K|1|BA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5K_013 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0707

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V5K|1|BA|U|1833
4V5K|1|BA|U|1834
4V5K|1|BA|G|1835
*
4V5K|1|BA|C|1905
4V5K|1|BA|G|1906
*
4V5K|1|BA|C|1924
4V5K|1|BA|C|1925
4V5K|1|BA|U|1926
4V5K|1|BA|A|1927
4V5K|1|BA|A|1928
4V5K|1|BA|G|1929
4V5K|1|BA|G|1930
4V5K|1|BA|U|1931
4V5K|1|BA|A|1932
4V5K|1|BA|G|1933
*
4V5K|1|BA|C|1967
4V5K|1|BA|G|1968
4V5K|1|BA|A|1969
4V5K|1|BA|A|1970
4V5K|1|BA|A|1971
4V5K|1|BA|A|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain BD

50S RIBOSOMAL PROTEIN L2