J4_4V5K_014

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAAGG*CCUGAC*GGG*CGG

Length

18 nucleotides

Bulged bases

4V5K|1|BA|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|BA|C|2285
4V5K|1|BA|A|2286
4V5K|1|BA|A|2287
4V5K|1|BA|A|2288
4V5K|1|BA|G|2289
4V5K|1|BA|G|2290
*
4V5K|1|BA|C|2342
4V5K|1|BA|C|2343
4V5K|1|BA|U|2344
4V5K|1|BA|G|2345
4V5K|1|BA|A|2346
4V5K|1|BA|C|2347
*
4V5K|1|BA|G|2370
4V5K|1|BA|G|2371
4V5K|1|BA|G|2372
*
4V5K|1|BA|C|2381
4V5K|1|BA|G|2382
4V5K|1|BA|G|2383

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain B6

50S RIBOSOMAL PROTEIN L33

Chain B8

50S RIBOSOMAL PROTEIN L35

Chain BS

50S RIBOSOMAL PROTEIN L18