J4_4V5K_019

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUGGA*UACAAUG*CCCAGUUCGGAUU*AUGAAGCCGGAAUC

Length

40 nucleotides

Bulged bases

4V5K|1|CA|U|1240, 4V5K|1|CA|U|1302, 4V5K|1|CA|G|1338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|CA|G|941
4V5K|1|CA|G|942
4V5K|1|CA|U|943
4V5K|1|CA|G|944
4V5K|1|CA|G|945
4V5K|1|CA|A|946
*
4V5K|1|CA|U|1235
4V5K|1|CA|A|1236
4V5K|1|CA|C|1237
4V5K|1|CA|A|1238
4V5K|1|CA|A|1239
4V5K|1|CA|U|1240
4V5K|1|CA|G|1241
*
4V5K|1|CA|C|1296
4V5K|1|CA|C|1297
4V5K|1|CA|C|1298
4V5K|1|CA|A|1299
4V5K|1|CA|G|1300
4V5K|1|CA|U|1301
4V5K|1|CA|U|1302
4V5K|1|CA|C|1303
4V5K|1|CA|G|1304
4V5K|1|CA|G|1305
4V5K|1|CA|A|1306
4V5K|1|CA|U|1307
4V5K|1|CA|U|1308
*
4V5K|1|CA|A|1329
4V5K|1|CA|U|1330
4V5K|1|CA|G|1331
4V5K|1|CA|A|1332
4V5K|1|CA|A|1333
4V5K|1|CA|G|1334
4V5K|1|CA|C|1335
4V5K|1|CA|C|1336
4V5K|1|CA|G|1337
4V5K|1|CA|G|1338
4V5K|1|CA|A|1339
4V5K|1|CA|A|1340
4V5K|1|CA|U|1341
4V5K|1|CA|C|1342

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S7

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CU

30S RIBOSOMAL PROTEIN THX

Chain CV

Transfer RNA; tRNA

Chain CW

Transfer RNA; tRNA