J4_4V5P_004
3D structure
- PDB id
- 4V5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4V5P|1|AV|U|8, 4V5P|1|AV|U|47, 4V5P|1|AV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5P_004 not in the Motif Atlas
- Homologous match to J4_6UFM_001
- Geometric discrepancy: 0.2132
- The information below is about J4_6UFM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
4V5P|1|AV|A|7
4V5P|1|AV|U|8
4V5P|1|AV|A|9
4V5P|1|AV|G|10
*
4V5P|1|AV|C|25
4V5P|1|AV|A|26
4V5P|1|AV|G|27
*
4V5P|1|AV|C|43
4V5P|1|AV|G|44
4V5P|1|AV|U|45
4V5P|1|AV|G|46
4V5P|1|AV|U|47
4V5P|1|AV|C|48
4V5P|1|AV|C|49
*
4V5P|1|AV|G|65
4V5P|1|AV|U|66
Current chains
- Chain AV
- E-SITE TRNA PHE OR P-SITE TRNA PHE
Nearby chains
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain B0
- 50S RIBOSOMAL PROTEIN L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
Coloring options: