J4_4V5P_005

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(4SU)CGUU*AGCAC*GGU(7MG)UUG*CC

Length

20 nucleotides

Bulged bases

4V5P|1|AY|4SU|8, 4V5P|1|AY|U|47, 4V5P|1|AY|U|48

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5P|1|AY|G|7
4V5P|1|AY|4SU|8
4V5P|1|AY|C|9
4V5P|1|AY|G|10
4V5P|1|AY|U|11
4V5P|1|AY|U|12
*
4V5P|1|AY|A|23
4V5P|1|AY|G|24
4V5P|1|AY|C|25
4V5P|1|AY|A|26
4V5P|1|AY|C|27
*
4V5P|1|AY|G|43
4V5P|1|AY|G|44
4V5P|1|AY|U|45
4V5P|1|AY|7MG|46
4V5P|1|AY|U|47
4V5P|1|AY|U|48
4V5P|1|AY|G|49
*
4V5P|1|AY|C|65
4V5P|1|AY|C|66

Current chains

Chain AY

A-SITE TRNA A9C TRP-TRNA TRP

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AZ

ELONGATION FACTOR TU

Chain BA

Large subunit ribosomal RNA; LSU rRNA