3D structure

PDB id
4V5P (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AUAG*CAG*CGUGUCC*GU
Length
16 nucleotides
Bulged bases
4V5P|1|CV|U|8, 4V5P|1|CV|U|47, 4V5P|1|CV|C|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V5P_019 not in the Motif Atlas
Homologous match to J4_6UFM_001
Geometric discrepancy: 0.2129
The information below is about J4_6UFM_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_70449.29
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
54

Unit IDs

4V5P|1|CV|A|7
4V5P|1|CV|U|8
4V5P|1|CV|A|9
4V5P|1|CV|G|10
*
4V5P|1|CV|C|25
4V5P|1|CV|A|26
4V5P|1|CV|G|27
*
4V5P|1|CV|C|43
4V5P|1|CV|G|44
4V5P|1|CV|U|45
4V5P|1|CV|G|46
4V5P|1|CV|U|47
4V5P|1|CV|C|48
4V5P|1|CV|C|49
*
4V5P|1|CV|G|65
4V5P|1|CV|U|66

Current chains

Chain CV
E-SITE TRNA PHE OR P-SITE TRNA PHE

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain CM
30S RIBOSOMAL PROTEIN S13
Chain D0
50S RIBOSOMAL PROTEIN L27
Chain DA
Large subunit ribosomal RNA; LSU rRNA
Chain DQ
50S RIBOSOMAL PROTEIN L16

Coloring options:


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