3D structure

PDB id
4V5P (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAG*CGUAG*CGAG*CGCAAGCGGGCCGCACGCGGCCCGCAAAG
Length
42 nucleotides
Bulged bases
4V5P|1|DA|A|654, 4V5P|1|DA|C|654|||I, 4V5P|1|DA|A|654|||J, 4V5P|1|DA|C|654|||K
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5P|1|DA|C|601
4V5P|1|DA|G|602
4V5P|1|DA|A|603
4V5P|1|DA|G|604
*
4V5P|1|DA|C|624
4V5P|1|DA|G|625
4V5P|1|DA|U|626
4V5P|1|DA|A|627
4V5P|1|DA|G|628
*
4V5P|1|DA|C|635
4V5P|1|DA|G|636
4V5P|1|DA|A|637
4V5P|1|DA|G|638
*
4V5P|1|DA|C|650
4V5P|1|DA|G|651
4V5P|1|DA|C|652
4V5P|1|DA|A|653
4V5P|1|DA|A|654
4V5P|1|DA|G|654|||A
4V5P|1|DA|C|654|||B
4V5P|1|DA|G|654|||C
4V5P|1|DA|G|654|||D
4V5P|1|DA|G|654|||E
4V5P|1|DA|C|654|||F
4V5P|1|DA|C|654|||G
4V5P|1|DA|G|654|||H
4V5P|1|DA|C|654|||I
4V5P|1|DA|A|654|||J
4V5P|1|DA|C|654|||K
4V5P|1|DA|G|654|||L
4V5P|1|DA|C|654|||M
4V5P|1|DA|G|654|||N
4V5P|1|DA|G|654|||O
4V5P|1|DA|C|654|||P
4V5P|1|DA|C|654|||Q
4V5P|1|DA|C|654|||R
4V5P|1|DA|G|654|||S
4V5P|1|DA|C|654|||T
4V5P|1|DA|A|654|||U
4V5P|1|DA|A|654|||V
4V5P|1|DA|A|655
4V5P|1|DA|G|656

Current chains

Chain DA
23S RIBOSOMAL RNA

Nearby chains

Chain D8
50S RIBOSOMAL PROTEIN L35
Chain DF
50S RIBOSOMAL PROTEIN L4
Chain DP
50S RIBOSOMAL PROTEIN L15

Coloring options:

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