Loop J4_4V5P

3D structure

PDB id: 4V5P (explore in PDB, NAKB, or RNA 3D Hub)
Description: The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: CGAG*CGUAG*CGAG*CGCAAGCGGGCCGCACGCGGCCCGCAAAG
Length: 42 nucleotides
Bulged bases: 4V5P|1|DA|A|654, 4V5P|1|DA|C|654|||I, 4V5P|1|DA|A|654|||J, 4V5P|1|DA|C|654|||K
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5P|1|DA|C|601
4V5P|1|DA|G|602
4V5P|1|DA|A|603
4V5P|1|DA|G|604
*
4V5P|1|DA|C|624
4V5P|1|DA|G|625
4V5P|1|DA|U|626
4V5P|1|DA|A|627
4V5P|1|DA|G|628
*
4V5P|1|DA|C|635
4V5P|1|DA|G|636
4V5P|1|DA|A|637
4V5P|1|DA|G|638
*
4V5P|1|DA|C|650
4V5P|1|DA|G|651
4V5P|1|DA|C|652
4V5P|1|DA|A|653
4V5P|1|DA|A|654
4V5P|1|DA|G|654|||A
4V5P|1|DA|C|654|||B
4V5P|1|DA|G|654|||C
4V5P|1|DA|G|654|||D
4V5P|1|DA|G|654|||E
4V5P|1|DA|C|654|||F
4V5P|1|DA|C|654|||G
4V5P|1|DA|G|654|||H
4V5P|1|DA|C|654|||I
4V5P|1|DA|A|654|||J
4V5P|1|DA|C|654|||K
4V5P|1|DA|G|654|||L
4V5P|1|DA|C|654|||M
4V5P|1|DA|G|654|||N
4V5P|1|DA|G|654|||O
4V5P|1|DA|C|654|||P
4V5P|1|DA|C|654|||Q
4V5P|1|DA|C|654|||R
4V5P|1|DA|G|654|||S
4V5P|1|DA|C|654|||T
4V5P|1|DA|A|654|||U
4V5P|1|DA|A|654|||V
4V5P|1|DA|A|655
4V5P|1|DA|G|656

Current chains

Chain DA: 23S RIBOSOMAL RNA

Nearby chains

Chain D8: 50S RIBOSOMAL PROTEIN L35
Chain DF: 50S RIBOSOMAL PROTEIN L4
Chain DP: 50S RIBOSOMAL PROTEIN L15

J4_4V5P_022