J4_4V5Y_003
3D structure
- PDB id
- 4V5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.45 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4V5Y|1|AA|C|576, 4V5Y|1|AA|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5Y_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.161
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V5Y|1|AA|G|575
4V5Y|1|AA|C|576
4V5Y|1|AA|G|577
*
4V5Y|1|AA|C|764
4V5Y|1|AA|G|765
4V5Y|1|AA|A|766
4V5Y|1|AA|A|767
4V5Y|1|AA|A|768
4V5Y|1|AA|G|769
*
4V5Y|1|AA|C|810
4V5Y|1|AA|C|811
4V5Y|1|AA|G|812
4V5Y|1|AA|U|813
4V5Y|1|AA|A|814
4V5Y|1|AA|A|815
4V5Y|1|AA|A|816
4V5Y|1|AA|C|817
4V5Y|1|AA|G|818
4V5Y|1|AA|A|819
4V5Y|1|AA|U|820
4V5Y|1|AA|G|821
*
4V5Y|1|AA|C|879
4V5Y|1|AA|C|880
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AH
- 30S ribosomal protein S8
- Chain AK
- 30S ribosomal protein S11
- Chain AL
- 30S ribosomal protein S12
- Chain AO
- 30S ribosomal protein S15
- Chain AQ
- 30S ribosomal protein S17
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: