J4_4V5Y_012

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V5Y|1|BB|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5Y_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1272

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4V5Y|1|BB|C|1833
4V5Y|1|BB|U|1834
4V5Y|1|BB|G|1835
*
4V5Y|1|BB|C|1905
4V5Y|1|BB|G|1906
*
4V5Y|1|BB|C|1924
4V5Y|1|BB|C|1925
4V5Y|1|BB|U|1926
4V5Y|1|BB|A|1927
4V5Y|1|BB|A|1928
4V5Y|1|BB|G|1929
4V5Y|1|BB|G|1930
4V5Y|1|BB|U|1931
4V5Y|1|BB|A|1932
4V5Y|1|BB|G|1933
*
4V5Y|1|BB|C|1967
4V5Y|1|BB|G|1968
4V5Y|1|BB|A|1969
4V5Y|1|BB|A|1970
4V5Y|1|BB|U|1971
4V5Y|1|BB|G|1972

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2