J4_4V64_005

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V64_005 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1139

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V64|1|BB|G|297
4V64|1|BB|G|298
4V64|1|BB|A|299
4V64|1|BB|A|300
4V64|1|BB|G|301
*
4V64|1|BB|C|316
4V64|1|BB|G|317
4V64|1|BB|C|318
4V64|1|BB|G|319
*
4V64|1|BB|C|323
4V64|1|BB|A|324
4V64|1|BB|G|325
*
4V64|1|BB|C|337
4V64|1|BB|G|338
4V64|1|BB|U|339
4V64|1|BB|A|340
4V64|1|BB|C|341

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24