J4_4V64_020

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V64|1|DB|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V64_020 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2445

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V64|1|DB|C|601
4V64|1|DB|A|602
4V64|1|DB|A|603
4V64|1|DB|G|604
*
4V64|1|DB|C|624
4V64|1|DB|G|625
4V64|1|DB|A|626
4V64|1|DB|A|627
4V64|1|DB|G|628
*
4V64|1|DB|C|635
4V64|1|DB|G|636
4V64|1|DB|A|637
4V64|1|DB|G|638
*
4V64|1|DB|C|650
4V64|1|DB|G|651
4V64|1|DB|U|652
4V64|1|DB|U|653
4V64|1|DB|A|654
4V64|1|DB|A|655
4V64|1|DB|G|656

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15