J4_4V67_005

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

4V67|1|AZ|U|8, 4V67|1|AZ|U|47, 4V67|1|AZ|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V67_005 not in the Motif Atlas

Homologous match to J4_6UFG_001

Geometric discrepancy: 0.2389

The information below is about J4_6UFG_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

4V67|1|AZ|G|7
4V67|1|AZ|U|8
4V67|1|AZ|G|9
4V67|1|AZ|G|10
*
4V67|1|AZ|C|25
4V67|1|AZ|G|26
4V67|1|AZ|U|27
*
4V67|1|AZ|A|43
4V67|1|AZ|A|44
4V67|1|AZ|G|45
4V67|1|AZ|G|46
4V67|1|AZ|U|47
4V67|1|AZ|C|48
4V67|1|AZ|G|49
*
4V67|1|AZ|C|65
4V67|1|AZ|C|66

Current chains

Chain AZ

P AND E-SITE TRNA(FMET)

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AK

30S ribosomal protein S11

Chain B6

50S ribosomal protein L33