3D structure

PDB id
4V67 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of a translation termination complex formed with release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
4V67|1|BA|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V67_014 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0758
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4V67|1|BA|U|1833
4V67|1|BA|U|1834
4V67|1|BA|G|1835
*
4V67|1|BA|C|1905
4V67|1|BA|G|1906
*
4V67|1|BA|C|1924
4V67|1|BA|C|1925
4V67|1|BA|U|1926
4V67|1|BA|A|1927
4V67|1|BA|A|1928
4V67|1|BA|G|1929
4V67|1|BA|G|1930
4V67|1|BA|U|1931
4V67|1|BA|A|1932
4V67|1|BA|G|1933
*
4V67|1|BA|C|1967
4V67|1|BA|G|1968
4V67|1|BA|A|1969
4V67|1|BA|A|1970
4V67|1|BA|A|1971
4V67|1|BA|A|1972

Current chains

Chain BA
23S RRNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AY
Transfer RNA; tRNA
Chain BD
50S ribosomal protein L2

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