J4_4V6C_018

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

CCAG*CGAUGAGUAG*UGAAUAUG*CAAG

Length

26 nucleotides

Bulged bases

4V6C|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6C|1|DA|C|268
4V6C|1|DA|C|269
4V6C|1|DA|A|270
4V6C|1|DA|G|271
*
4V6C|1|DA|C|366
4V6C|1|DA|G|367
4V6C|1|DA|A|368
4V6C|1|DA|U|369
4V6C|1|DA|G|370
4V6C|1|DA|A|371
4V6C|1|DA|G|372
4V6C|1|DA|U|373
4V6C|1|DA|A|374
4V6C|1|DA|G|375
*
4V6C|1|DA|U|399
4V6C|1|DA|G|400
4V6C|1|DA|A|401
4V6C|1|DA|A|402
4V6C|1|DA|U|403
4V6C|1|DA|A|404
4V6C|1|DA|U|405
4V6C|1|DA|G|406
*
4V6C|1|DA|C|421
4V6C|1|DA|A|422
4V6C|1|DA|A|423
4V6C|1|DA|G|424

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DH

50S ribosomal protein L9

Chain DX

50S ribosomal protein L28