J4_4V6C_026

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V6C|1|DA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6C_026 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.0867

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V6C|1|DA|C|1833
4V6C|1|DA|U|1834
4V6C|1|DA|G|1835
*
4V6C|1|DA|C|1905
4V6C|1|DA|G|1906
*
4V6C|1|DA|C|1924
4V6C|1|DA|C|1925
4V6C|1|DA|U|1926
4V6C|1|DA|A|1927
4V6C|1|DA|A|1928
4V6C|1|DA|G|1929
4V6C|1|DA|G|1930
4V6C|1|DA|U|1931
4V6C|1|DA|A|1932
4V6C|1|DA|G|1933
*
4V6C|1|DA|C|1967
4V6C|1|DA|G|1968
4V6C|1|DA|A|1969
4V6C|1|DA|A|1970
4V6C|1|DA|U|1971
4V6C|1|DA|G|1972

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2