J4_4V6D_008

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GGUUC*GGUGAG*CUU*AAAUCGUAC

Length

23 nucleotides

Bulged bases

4V6D|1|BA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6D|1|BA|G|1310
4V6D|1|BA|G|1311
4V6D|1|BA|U|1312
4V6D|1|BA|U|1313
4V6D|1|BA|C|1314
*
4V6D|1|BA|G|1338
4V6D|1|BA|G|1339
4V6D|1|BA|U|1340
4V6D|1|BA|G|1341
4V6D|1|BA|A|1342
4V6D|1|BA|G|1343
*
4V6D|1|BA|C|1404
4V6D|1|BA|U|1405
4V6D|1|BA|U|1406
*
4V6D|1|BA|A|1596
4V6D|1|BA|A|1597
4V6D|1|BA|A|1598
4V6D|1|BA|U|1599
4V6D|1|BA|C|1600
4V6D|1|BA|G|1601
4V6D|1|BA|U|1602
4V6D|1|BA|A|1603
4V6D|1|BA|C|1604

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23