3D structure

PDB id
4V6D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.81 Å

Loop

Sequence
GGAAGC*GCGCG*CAG*CGUAC
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6D|1|DA|G|297
4V6D|1|DA|G|298
4V6D|1|DA|A|299
4V6D|1|DA|A|300
4V6D|1|DA|G|301
4V6D|1|DA|C|302
*
4V6D|1|DA|G|315
4V6D|1|DA|C|316
4V6D|1|DA|G|317
4V6D|1|DA|C|318
4V6D|1|DA|G|319
*
4V6D|1|DA|C|323
4V6D|1|DA|A|324
4V6D|1|DA|G|325
*
4V6D|1|DA|C|337
4V6D|1|DA|G|338
4V6D|1|DA|U|339
4V6D|1|DA|A|340
4V6D|1|DA|C|341

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DE
50S ribosomal protein L4
Chain DU
50S ribosomal protein L24

Coloring options:

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