J4_4V6D_018

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GGAAGC*GCGCG*CAG*CGUAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6D|1|DA|G|297
4V6D|1|DA|G|298
4V6D|1|DA|A|299
4V6D|1|DA|A|300
4V6D|1|DA|G|301
4V6D|1|DA|C|302
*
4V6D|1|DA|G|315
4V6D|1|DA|C|316
4V6D|1|DA|G|317
4V6D|1|DA|C|318
4V6D|1|DA|G|319
*
4V6D|1|DA|C|323
4V6D|1|DA|A|324
4V6D|1|DA|G|325
*
4V6D|1|DA|C|337
4V6D|1|DA|G|338
4V6D|1|DA|U|339
4V6D|1|DA|A|340
4V6D|1|DA|C|341

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DU

50S ribosomal protein L24