3D structure

PDB id
4V6E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
CCAG*CGAUGAGUAG*UGAAUAUG*CAAG
Length
26 nucleotides
Bulged bases
4V6E|1|DA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6E|1|DA|C|268
4V6E|1|DA|C|269
4V6E|1|DA|A|270
4V6E|1|DA|G|271
*
4V6E|1|DA|C|366
4V6E|1|DA|G|367
4V6E|1|DA|A|368
4V6E|1|DA|U|369
4V6E|1|DA|G|370
4V6E|1|DA|A|371
4V6E|1|DA|G|372
4V6E|1|DA|U|373
4V6E|1|DA|A|374
4V6E|1|DA|G|375
*
4V6E|1|DA|U|399
4V6E|1|DA|G|400
4V6E|1|DA|A|401
4V6E|1|DA|A|402
4V6E|1|DA|U|403
4V6E|1|DA|A|404
4V6E|1|DA|U|405
4V6E|1|DA|G|406
*
4V6E|1|DA|C|421
4V6E|1|DA|A|422
4V6E|1|DA|A|423
4V6E|1|DA|G|424

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DH
50S ribosomal protein L9
Chain DX
50S ribosomal protein L28

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.7106 s
Application loaded.