3D structure

PDB id
4V6E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
4V6E|1|DA|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V6E_024 not in the Motif Atlas
Homologous match to J4_5J7L_026
Geometric discrepancy: 0.1053
The information below is about J4_5J7L_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4V6E|1|DA|C|1833
4V6E|1|DA|U|1834
4V6E|1|DA|G|1835
*
4V6E|1|DA|C|1905
4V6E|1|DA|G|1906
*
4V6E|1|DA|C|1924
4V6E|1|DA|C|1925
4V6E|1|DA|U|1926
4V6E|1|DA|A|1927
4V6E|1|DA|A|1928
4V6E|1|DA|G|1929
4V6E|1|DA|G|1930
4V6E|1|DA|U|1931
4V6E|1|DA|A|1932
4V6E|1|DA|G|1933
*
4V6E|1|DA|C|1967
4V6E|1|DA|G|1968
4V6E|1|DA|A|1969
4V6E|1|DA|A|1970
4V6E|1|DA|U|1971
4V6E|1|DA|G|1972

Current chains

Chain DA
23S rRNA

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain DC
50S ribosomal protein L2

Coloring options:


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