J4_4V6F_007

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6F_007 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0718

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V6F|1|AA|G|1772
4V6F|1|AA|A|1773
4V6F|1|AA|C|1774
4V6F|1|AA|U|1775
4V6F|1|AA|G|1776
*
4V6F|1|AA|C|1788
4V6F|1|AA|A|1789
4V6F|1|AA|C|1790
4V6F|1|AA|A|1791
4V6F|1|AA|G|1792
*
4V6F|1|AA|C|1827
4V6F|1|AA|G|1828
4V6F|1|AA|A|1829
4V6F|1|AA|C|1830
*
4V6F|1|AA|G|1975
4V6F|1|AA|U|1976
4V6F|1|AA|A|1977
4V6F|1|AA|A|1978
4V6F|1|AA|C|1979

Current chains

Chain AA

23S RIBOSOMAL RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA