J4_4V6F_014

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

4V6F|1|BB|U|8, 4V6F|1|BB|U|47, 4V6F|1|BB|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6F_014 not in the Motif Atlas

Homologous match to J4_5E81_030

Geometric discrepancy: 0.4021

The information below is about J4_5E81_030

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

4V6F|1|BB|A|7
4V6F|1|BB|U|8
4V6F|1|BB|A|9
4V6F|1|BB|G|10
*
4V6F|1|BB|C|25
4V6F|1|BB|A|26
4V6F|1|BB|G|27
*
4V6F|1|BB|C|43
4V6F|1|BB|G|44
4V6F|1|BB|U|45
4V6F|1|BB|G|46
4V6F|1|BB|U|47
4V6F|1|BB|C|48
4V6F|1|BB|C|49
*
4V6F|1|BB|G|65
4V6F|1|BB|U|66

Current chains

Chain BB

TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA