J4_4V6F_030

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V6F|1|DA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6F_030 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1111

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V6F|1|DA|U|1833
4V6F|1|DA|U|1834
4V6F|1|DA|G|1835
*
4V6F|1|DA|C|1905
4V6F|1|DA|G|1906
*
4V6F|1|DA|C|1924
4V6F|1|DA|C|1925
4V6F|1|DA|U|1926
4V6F|1|DA|A|1927
4V6F|1|DA|A|1928
4V6F|1|DA|G|1929
4V6F|1|DA|G|1930
4V6F|1|DA|U|1931
4V6F|1|DA|A|1932
4V6F|1|DA|G|1933
*
4V6F|1|DA|C|1967
4V6F|1|DA|G|1968
4V6F|1|DA|A|1969
4V6F|1|DA|A|1970
4V6F|1|DA|A|1971
4V6F|1|DA|A|1972

Current chains

Chain DA

23S RRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

Transfer RNA; tRNA

Chain DD

50S RIBOSOMAL PROTEIN L2