J4_4V6G_021

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

4V6G|1|CD|U|8, 4V6G|1|CD|U|47, 4V6G|1|CD|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6G_021 not in the Motif Atlas

Homologous match to J4_8VU0_001

Geometric discrepancy: 0.2497

The information below is about J4_8VU0_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

4V6G|1|CD|G|7
4V6G|1|CD|U|8
4V6G|1|CD|G|9
4V6G|1|CD|G|10
*
4V6G|1|CD|C|25
4V6G|1|CD|G|26
4V6G|1|CD|U|27
*
4V6G|1|CD|A|43
4V6G|1|CD|A|44
4V6G|1|CD|G|45
4V6G|1|CD|G|46
4V6G|1|CD|U|47
4V6G|1|CD|C|48
4V6G|1|CD|G|49
*
4V6G|1|CD|C|65
4V6G|1|CD|C|66

Current chains

Chain CD

TRNA FMET (UNMODIFIED BASES)

Nearby chains

Chain CJ

30S RIBOSOMAL PROTEIN S7

Chain CN

30S RIBOSOMAL PROTEIN S11