J4_4V7K_002

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7K_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0782

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V7K|1|AA|C|297
4V7K|1|AA|G|298
4V7K|1|AA|A|299
4V7K|1|AA|A|300
4V7K|1|AA|G|301
*
4V7K|1|AA|C|316
4V7K|1|AA|G|317
4V7K|1|AA|C|318
4V7K|1|AA|C|319
*
4V7K|1|AA|G|323
4V7K|1|AA|A|324
4V7K|1|AA|G|325
*
4V7K|1|AA|C|337
4V7K|1|AA|G|338
4V7K|1|AA|U|339
4V7K|1|AA|A|340
4V7K|1|AA|G|341

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AY

50S ribosomal protein L24